References
Alam, MT, Merlo, ME, Takano, E, Breitling, R, (2010). Genome-based phylogenetic analysis of Streptomyces and its relatives. Mol Phylogenet Evol, 54:763-72.
Anderson, AS, and Wellington, EM, (2001). The taxonomy of Streptomyces and related genera. Int J Syst Evol Microbiol, 51:797-814.
Bhattacharjee, K, Banerjee, S, Joshi, SR, (2012). Diversity of Streptomyces spp. in Eastern Himalayan region – computational RNomics approach to phylogeny. Bioinformation, 8:548-554.
Bhattacharjee, K, Joshi, SR, (2013). Phylogenetic rearrangement of Streptomyces spp. on the basis of internal transcribed spacer (ITS) region using molecular morphometrics approach. Indian J Biotechnol, 12:67-79.
Bosshard, PP, Abels, S, Zbinden, R, Böttger, EC, Altwegg, M, (2003). Ribosomal DNA sequencing for identification of aerobic gram-positive rods in the clinical laboratory (an 18-month evaluation). J Clin Microbiol, 41:4134-40.
Chaudhary, A, Singh, HS, (2013). Secondary structure and phylogenetic utility of the ribosomal large subunit (28S) in monogeneans of the genus Thaparocleidus and Bifurcohaptor (Monogenea: Dactylogyridae). J Parasit Dis, 37:74–83.
Clarridge, JE, (2004). Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases. Clin Microbiol Rev, 17:840–862.
Edgar, RC, (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res, 32:1792–1797.
Edison, LK, Shiburaj, S, Pradeep, NS, (2017). Exploration of Western Ghats Regions in Kerala for Isolating Beta- Glucanase Producing Actinomycetes Strains. Trends Biosci, 10:8453-8456.
Felsenstein, J, (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39:783-791.
Fraile, A, García-Arenal, F, (1991). Secondary structure as a constraint on the evolution of a plant viral satellite RNA. J Mol Biol, 221:1065-1069.
Kawato, M, Shinolue, R (1959). A simple technique for the microscopical observation. Memoirs of the Osaka University Liberal Arts and Education. 1-1 Yamadaoka Suita, Osaka Japan, pp. 114.
Kibbe, WA, (2007).OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res, 35:W43-46.
Kumar, S, Stecher, G, Tamura, K, (2016). MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol, 33:1870-1874.
Mincer, TJ, Jensen, PR, Kauffman, CA, Fenical, W, (2002). Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl Environ Microbiol, 68:5005-11.
Murray, MG, Thompson, WF, (1980). Rapid isolation of high molecular weight plant DNA. Nucl Acids Res, 8:4321-4325.
Rice, P, Longden, I, Bleasby, A, (2000). EMBOSS: The European molecular biology open software suite. Trends Genet, 16:276-277.
Saitou, N, Nei, M, (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. MolBiolEvol, 4:406-425.
Shirling, EB, Gottlieb, D, (1966). Methods for Characterization of Streptomyces Species. Int J Syst Evol Microbiol, 16:317-327.
Singh, V, Praveen, V, Khan, F, Tripathi, CKM, (2009).Phylogenetics of an antibiotic producing Streptomyces strain isolated from soil. Bioinformation, 4:53–58.
Singh, V, Somvanshi, P, (2009). Computational modeling analyses of RNA secondary structures and phylogenetic inference of evolutionary conserved 5S rRNA in the prokaryotes. J Mol Graph Model, 27:770–776.
Somvanshi, P, Seth, PK, (2009). Predicted RNA secondary structures for the conserved regions in dengue virus. Bioinformation, 3:435–439.
Somvanshi, P, Singh, V, Arshad, M, (2008).Modeling of RNA Secondary Structure of Non Structural Gene and Evolutionary Stability of the Influenza Virus Through In Silico Methods. J Proteomics Bioinform, 1:219-226.
Tamura, K, Nei, M, Kumar, S, (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA, 101:11030-11035.
Ward, A, Goodfellow, M, (2004). Taxonomy as a road map for search and biodiscovery, Microbiology, 25:13-15.
Weisburg, WG, Barns, SM, Pelletier, DA, Lane, DJ, (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol, 173:697-703.
Williams, ST, Goodfellow, M, Alderson, G, Wellington, EMH, Sneath, PHA, Sackin, MJ, (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol, 129:1743-1813.
Wright, ES, Yilmaz, LS, Noguera, DR, (2012). DECIPHER, A Search-Based Approach to Chimera Identification for 16S rRNA Sequences. Appl Environ Microbiol, 78:717-725.
Yoon, SH, Ha, SM, Kwon, S, Lim, J, Kim, Y, Seo, H, Chun, J, (2017). Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol, 67:1613-1617.
Zhuang, WY, Liu, CY, (2012). What an rRNA Secondary Structure Tells about Phylogeny of Fungi in Ascomycota with Emphasis on Evolution of Major Types of Ascus. PLoS ONE 7: e47546.
Zuker, M, (1994). Prediction of RNA secondary structure by energy minimization. In: Griffin AM, Griffin HG (eds) Computer analysis of sequence data, Part II, vol 25, Chap CRC Press Inc., Totowa, pp 267–294.
Zuker, M, (2003).Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res, 31:3406-15.